PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D0ST6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 156aa    MW: 18369.6 Da    PI: 10.249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D0ST6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-3167125159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYG K+vk+++fprsYYrC+++gC+vkk+++r + d+++v++tYeg H h+
  Araip.D0ST6  67 LDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCNVKKQIQRHSMDEQIVITTYEGVHIHP 125
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-3252125IPR003657WRKY domain
SuperFamilySSF1182901.7E-2759126IPR003657WRKY domain
PROSITE profilePS5081129.14962127IPR003657WRKY domain
SMARTSM007743.7E-3667126IPR003657WRKY domain
PfamPF031061.3E-2568125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDNNRQILFP SSSSSDFKVS SSNSFLDVKK GDILRTPNKE SSSKKGGKES KKQHRYVFQT  60
RSHVDILDDG YRWRKYGEKS VKNNKFPRSY YRCSYRGCNV KKQIQRHSMD EQIVITTYEG  120
VHIHPVEKST ESFEQILRNF QYTTKSNPIM YLQQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2658124874Probable WRKY transcription factor 4
2lex_A2e-2658124874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193503.11e-113PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA22e-48WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLA0A0B2QA007e-65A0A0B2QA00_GLYSO; Putative WRKY transcription factor 75
TrEMBLI1KP657e-65I1KP65_SOYBN; Uncharacterized protein
STRINGGLYMA08G01430.12e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-49WRKY DNA-binding protein 75